Match details
Record ID: |
AF327581.1 |
Database: |
nt |
Go to original record |
Description: |
Fraxinus excelsior tRNA-Leu (trnL) gene, intron; chloroplast gene for chloroplast product. |
Taxon: |
Fraxinus excelsior |
Original size: |
548 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
548 |
+ |
548 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tggtaacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt cccaaaacaa aggttcagaa
151 agaaaaaagg ataggtgcag agactcaatg gaagctgttc taacaaatgg
201 agtggactgc gttggtagag gaatctttcc atcgaaactt cagaaaggat
251 gaaggataaa cgtatatatt gaatactata tcaaatgatt aatgacgact
301 cgaatctcta tctgcatttt tttatatgaa aaatggaaga attgattcca
351 cattgaagaa ataatcgaat attcattgat caaatcattc actccatagt
401 ctgatagatc ttttaaagaa ctgattaatc ggacgagaat aaagatagag
451 tcccattcta catgtcaata ccggcaacaa tgaaatttat agtaaaagga
501 aaatccgtcg acttttaaaa tcgtgagggt tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
548 |
529 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.