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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY836538.1 nt Jasminum elegans isolate 393 tRNA-L... 930 bp Jasminum elegans QL-PLN-00-007 549 bp View
AY836539.1 nt Jasminum lanceolarium tRNA-Leu (trn... 983 bp Jasminum lanceolarium QL-PLN-00-007 549 bp View
AY836540.1 nt Jasminum elegans isolate 373 tRNA-L... 942 bp Jasminum elegans QL-PLN-00-007 549 bp View
AY836541.1 nt Jasminum floribundum tRNA-Leu (trnL... 932 bp Jasminum grandiflorum subsp. floribundum QL-PLN-00-007 549 bp View
AY836542.1 nt Jasminum abyssinicum tRNA-Leu (trnL... 912 bp Jasminum abyssinicum QL-PLN-00-007 549 bp View
AY836543.1 nt Jasminum leratii tRNA-Leu (trnL) an... 958 bp Jasminum leratii QL-PLN-00-007 550 bp View
AY836544.1 nt Jasminum mesnyi tRNA-Leu (trnL) and... 941 bp Jasminum mesnyi QL-PLN-00-007 549 bp View
AY836545.1 nt Menodora scabra tRNA-Leu (trnL) and... 915 bp Menodora scabra QL-PLN-00-007 552 bp View
AY879119.1 nt Andryala integrifolia voucher Schuh... 943 bp Andryala integrifolia QL-PLN-00-007 521 bp View
AY879120.1 nt Hieracium echioides subsp. echioide... 944 bp Hieracium echioides subsp. echioides QL-PLN-00-007 521 bp View
AY879125.1 nt Hieracium cymosum subsp. cymosum vo... 945 bp Pilosella cymosa subsp. cymosa QL-PLN-00-007 521 bp View
AY879128.1 nt Hieracium pilosella voucher Lippert... 935 bp Pilosella officinarum QL-PLN-00-007 521 bp View
AY881134.1 nt Euphrasia pectinata trnT-trnL inter... 1602 bp Euphrasia pectinata QL-PLN-00-007 534 bp View
AY881135.1 nt Melampyrum roseum trnT-trnL interge... 1608 bp Melampyrum roseum QL-PLN-00-007 553 bp View
AY881136.1 nt Odontites serotina trnT-trnL interg... 1597 bp Odontites vernus subsp. serotinus QL-PLN-00-007 543 bp View
AY881137.1 nt Orobanche coerulescens trnT-trnL in... 1307 bp Orobanche coerulescens QL-PLN-00-007 558 bp View
AY881138.1 nt Orobanche pycnostachya trnT-trnL in... 1301 bp Orobanche pycnostachya QL-PLN-00-007 573 bp View
AY944536.1 nt Cercidium andicola voucher R. Fortu... 1072 bp Parkinsonia andicola QL-PLN-00-007 596 bp View
AY944537.1 nt Parkinsonia praecox voucher R. Fort... 1067 bp Parkinsonia praecox QL-PLN-00-007 590 bp View
AY944539.1 nt Mimozyganthus carinatus voucher R. ... 1101 bp Mimozyganthus carinatus QL-PLN-00-007 621 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.