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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON598332.1 nt Zygophyllum pterocarpum voucher Ge1... 105390 bp Zygophyllum pterocarpum QL-PLN-00-007 533 bp View
ON598333.1 nt Zygophyllum pterocarpum voucher Ge1... 105411 bp Zygophyllum pterocarpum QL-PLN-00-007 533 bp View
ON598336.1 nt Zygophyllum mucronatum voucher MQ14... 104942 bp Zygophyllum mucronatum QL-PLN-00-007 543 bp View
ON598337.1 nt Zygophyllum mucronatum voucher MQ10... 105010 bp Zygophyllum mucronatum QL-PLN-00-007 543 bp View
ON598339.1 nt Zygophyllum fabago voucher Ge130213... 105439 bp Zygophyllum fabago QL-PLN-00-007 547 bp View
ON598343.1 nt Silene noctiflora voucher Ge130376 ... 151686 bp Silene noctiflora QL-PLN-00-007 528 bp View
ON641258.1 nt Clinopodium menthifolium subsp. asc... 152114 bp Clinopodium menthifolium subsp. ascendens QL-PLN-00-007 564 bp View
ON641259.1 nt Lavandula pedunculata subsp. lusita... 152039 bp Lavandula pedunculata subsp. lusitanica QL-PLN-00-007 554 bp View
ON641260.1 nt Lavandula stoechas subsp. luisieri ... 152065 bp Lavandula stoechas subsp. luisieri QL-PLN-00-007 555 bp View
ON641261.1 nt Thymus mastichina isolate BPTPS034 ... 151722 bp Thymus mastichina QL-PLN-00-007 544 bp View
ON641262.1 nt Thymus villosus subsp. lusitanicus ... 151830 bp Thymus villosus subsp. lusitanicus QL-PLN-00-007 544 bp View
ON641263.1 nt Lavandula stoechas subsp. luisieri ... 152039 bp Lavandula stoechas subsp. luisieri QL-PLN-00-007 554 bp View
ON641264.1 nt Lavandula stoechas subsp. luisieri ... 152100 bp Lavandula stoechas subsp. luisieri QL-PLN-00-007 555 bp View
ON641265.1 nt Mentha suaveolens isolate BPTPS057 ... 151824 bp Mentha suaveolens QL-PLN-00-007 571 bp View
ON641268.1 nt Thymus vulgaris isolate BPTPS079 vo... 151649 bp Thymus vulgaris QL-PLN-00-007 544 bp View
ON641269.1 nt Thymbra capitata isolate BPTPS101 v... 151475 bp Thymbra capitata QL-PLN-00-007 568 bp View
ON641270.1 nt Lavandula angustifolia isolate BPTP... 151434 bp Lavandula angustifolia QL-PLN-00-007 563 bp View
ON641272.1 nt Mentha pulegium isolate BPTPS116 vo... 152281 bp Mentha pulegium QL-PLN-00-007 566 bp View
ON641273.1 nt Mentha x piperita isolate BPTPS132 ... 152046 bp Mentha x piperita QL-PLN-00-007 571 bp View
ON641274.1 nt Mentha spicata isolate BPTPS133 vou... 152070 bp Mentha spicata QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.