Match details
Record ID: |
ON598332.1 |
Database: |
nt |
Go to original record |
Description: |
Zygophyllum pterocarpum voucher Ge130600 chloroplast, complete genome. |
Taxon: |
Zygophyllum pterocarpum |
Original size: |
105390 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47065 |
47597 |
+ |
533 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acatactaag tgatcacttt caaattcaga gaaaccctgg aattagaaat
101 gggcaatcct gagccaaatc ctgttttcaa aaaaaaaaat aattcaatca
151 aaagaatcaa aaaaggatag gtgcagagac tcaatggaag ctgttctaaa
201 aaatggagtt gactgctgca ttaagttagt caagtcaagg aatccttgca
251 tcaaaacttt caaaaagatg aaggataacc tttctttcta taaaactata
301 aaaagaaaaa gactttttga atcaaatcaa ttggaagttg aagaaagaat
351 caaatatgat ttgatcaaat catttactcc aaagtctgat atatcttttt
401 caaaatggat tagtcagatg agaataaaga tagagtccca ttctatatgt
451 cagtattgac aacaatgaaa tttatagtga gaggaaaatc cgtcgatttt
501 ataaatcgtg agggttcaag tccctctatc ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.40e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
533 |
514 |
2.40e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.