Match details
Record ID: |
ON641258.1 |
Database: |
nt |
Go to original record |
Description: |
Clinopodium menthifolium subsp. ascendens isolate BPTPS012 voucher LISE:96347 chloroplast, complete genome. |
Taxon: |
Clinopodium menthifolium subsp. ascendens |
Original size: |
152114 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46804 |
47367 |
+ |
564 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggtttcaaa
151 aaacgaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgac tgcgtcggta gaggaatctt tccatggaaa ctttctaaag
251 gatgaaagat aaacgcatct attgaatact atatcaaatg attaatgttg
301 gcccgaatct atttttttaa tatgaaaatg aaaaaatgga aaaatcggtg
351 tgaatttctt tcacgttgaa gaaaaaatag aatattcatc aactcattca
401 ctccacagtc cgatagatct tttaaagaac ttattaatcg gacgagaata
451 aagatagagt cccattctac atgctacata tcaataccgg caacaatgaa
501 atttatagta agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa
551 gtccctctat cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
564 |
545 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.