Amplicon details

Amplicon:

564 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggtttcaaa
151   aaacgaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201   tggagttgac tgcgtcggta gaggaatctt tccatggaaa ctttctaaag
251   gatgaaagat aaacgcatct attgaatact atatcaaatg attaatgttg
301   gcccgaatct atttttttaa tatgaaaatg aaaaaatgga aaaatcggtg
351   tgaatttctt tcacgttgaa gaaaaaatag aatattcatc aactcattca
401   ctccacagtc cgatagatct tttaaagaac ttattaatcg gacgagaata
451   aagatagagt cccattctac atgctacata tcaataccgg caacaatgaa
501   atttatagta agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa
551   gtccctctat cccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON684562.1 nt Clinopodium menthifolium subsp. asc... 575 bp Clinopodium menthifolium subsp. ascendens QL-PLN-00-007 564 bp View
ON641258.1 nt Clinopodium menthifolium subsp. asc... 152114 bp Clinopodium menthifolium subsp. ascendens QL-PLN-00-007 564 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.