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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON408220.1 nt Tetraena mongolica plastid, complet... 106156 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408221.1 nt Tetraena mongolica plastid, complet... 106163 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408222.1 nt Tetraena mongolica plastid, complet... 106179 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408223.1 nt Tetraena mongolica plastid, complet... 106225 bp Tetraena mongolica QL-PLN-00-007 536 bp View
ON408224.1 nt Tetraena mongolica plastid, complet... 106211 bp Tetraena mongolica QL-PLN-00-007 536 bp View
ON408225.1 nt Tetraena mongolica plastid, complet... 106181 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408226.1 nt Tetraena mongolica plastid, complet... 106159 bp Tetraena mongolica QL-PLN-00-007 536 bp View
ON408227.1 nt Tetraena mongolica plastid, complet... 106177 bp Tetraena mongolica QL-PLN-00-007 536 bp View
ON408228.1 nt Tetraena mongolica plastid, complet... 106062 bp Tetraena mongolica QL-PLN-00-007 536 bp View
ON408229.1 nt Tetraena mongolica plastid, complet... 106178 bp Tetraena mongolica QL-PLN-00-007 536 bp View
ON408231.1 nt Zygophyllum xanthoxylon plastid, co... 105802 bp Zygophyllum xanthoxylum QL-PLN-00-007 531 bp View
ON409199.1 nt Lilium souliei chloroplast, complet... 153164 bp Lilium souliei QL-PLN-00-007 606 bp View
ON453817.1 nt Campsis grandiflora chloroplast, co... 154282 bp Campsis grandiflora QL-PLN-00-007 562 bp View
ON456286.1 nt Primulina eburnea isolate SZY02 vou... 153242 bp Primulina eburnea QL-PLN-00-007 552 bp View
ON456287.1 nt Primulina hedyotidea chloroplast, c... 153289 bp Primulina hedyotidea QL-PLN-00-007 553 bp View
ON464732.1 nt Elsholtzia minima chloroplast, comp... 151160 bp Elsholtzia minima QL-PLN-00-007 571 bp View
ON597627.1 nt Citrullus rehmii chloroplast, compl... 157071 bp Citrullus rehmii QL-PLN-00-007 587 bp View
ON598327.1 nt Zygophyllum xanthoxylon voucher MQ0... 105375 bp Zygophyllum xanthoxylum QL-PLN-00-007 532 bp View
ON598328.1 nt Zygophyllum xanthoxylon voucher TLF... 105348 bp Zygophyllum xanthoxylum QL-PLN-00-007 532 bp View
ON598330.1 nt Zygophyllum rosowii voucher Q-200 c... 104563 bp Zygophyllum rosowii QL-PLN-00-007 532 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.