Match details
Record ID: |
ON408228.1 |
Database: |
nt |
Go to original record |
Description: |
Tetraena mongolica plastid, complete genome. |
Taxon: |
Tetraena mongolica |
Original size: |
106062 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47098 |
47633 |
+ |
536 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acatactaag tgatcacttt caaattcaga gaaaccctgg aattagaaat
101 gggcaatcct gagccaaatc ctgttttctg aaaaaaaaaa ataattcaat
151 caaaagaaaa agaatcaaaa aaggataggt gcagagactc aatggaagct
201 gttctaaaaa atggagttga ctgctgcatt atgttagtca agtcaaggaa
251 tccttgcata aaaactttca aaaagatgaa ggataaactt tctttctata
301 aaactctaaa aagaaaaata ctttttcaat caattggaag ttgaataaag
351 aatcaaatat aatttgatca aatcatttac tccaaagtct gatatatctt
401 tttcaaaatg gattagtcag atgagaataa agatagagtc ccattctata
451 tgtcagtatt gacaacaatg aaatttatag tgagaggaaa atccgtcgat
501 tttataaatc gtgagggttc aagtccctct atcccc
View other 8 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.41e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
536 |
517 |
2.41e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.