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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN102358.1 nt Mentha canadensis chloroplast, comp... 152048 bp Mentha canadensis QL-PLN-00-007 572 bp View
MN115424.1 nt Pediomelum digitatum voucher Jones ... 126051 bp Pediomelum digitatum QL-PLN-00-007 585 bp View
MN115425.1 nt Pediomelum tenuiflorum voucher Jone... 126144 bp Pediomelum tenuiflorum QL-PLN-00-007 585 bp View
MN115426.1 nt Pediomelum argophyllum voucher Jone... 126058 bp Pediomelum argophyllum QL-PLN-00-007 585 bp View
MN115427.1 nt Pediomelum digitatum voucher Jones ... 126081 bp Pediomelum digitatum QL-PLN-00-007 585 bp View
MN115428.1 nt Pediomelum tenuiflorum voucher Suth... 126209 bp Pediomelum tenuiflorum QL-PLN-00-007 585 bp View
MN115429.1 nt Ladeania lanceolata voucher Ahrends... 126014 bp Ladeania lanceolata QL-PLN-00-007 581 bp View
MN115430.1 nt Pediomelum esculentum voucher Ahren... 126249 bp Pediomelum esculentum QL-PLN-00-007 585 bp View
MN115431.1 nt Pediomelum tenuiflorum voucher Suth... 126166 bp Pediomelum tenuiflorum QL-PLN-00-007 585 bp View
MN128378.1 nt Wenchengia alternifolia isolate VN ... 152171 bp Wenchengia alternifolia QL-PLN-00-007 573 bp View
MN128379.1 nt Wenchengia alternifolia isolate HN ... 152843 bp Wenchengia alternifolia QL-PLN-00-007 572 bp View
MN128380.1 nt Tinnea aethiopica chloroplast, comp... 152450 bp Tinnea aethiopica QL-PLN-00-007 554 bp View
MN128381.1 nt Scutellaria quadrilobulata chloropl... 152066 bp Scutellaria quadrilobulata QL-PLN-00-007 550 bp View
MN128382.1 nt Scutellaria przewalskii chloroplast... 151675 bp Scutellaria przewalskii QL-PLN-00-007 549 bp View
MN128383.1 nt Scutellaria orthocalyx chloroplast,... 152071 bp Scutellaria orthocalyx QL-PLN-00-007 550 bp View
MN128384.1 nt Scutellaria mollifolia chloroplast,... 152417 bp Scutellaria mollifolia QL-PLN-00-007 550 bp View
MN128385.1 nt Scutellaria calcarata chloroplast, ... 152033 bp Scutellaria calcarata QL-PLN-00-007 551 bp View
MN128386.1 nt Scutellaria amoena chloroplast, com... 151833 bp Scutellaria amoena QL-PLN-00-007 556 bp View
MN128388.1 nt Holmskioldia sanguinea chloroplast,... 153272 bp Holmskioldia sanguinea QL-PLN-00-007 557 bp View
MN128389.1 nt Scutellaria kingiana chloroplast, c... 152395 bp Scutellaria kingiana QL-PLN-00-007 545 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.