Match details
Record ID: |
MN115427.1 |
Database: |
nt |
Go to original record |
Description: |
Pediomelum digitatum voucher Jones 1029 chloroplast, partial genome. |
Taxon: |
Pediomelum digitatum |
Original size: |
126081 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
13296 |
13880 |
- |
585 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagtct tggtatggaa
51 acttaccaag tgagaacttt caaattcaga gaaaccctgg aattcacaac
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga aaagttaaga
151 aagtgataat aaaaaaggga taggtgcaga gactcaatgg aagctattct
201 aacaaatgga gttgacgatt tttccttttt gcattaggaa aagaatcctt
251 ccataaaaat tccaggaatg gatcaaagag aaacatatat atactgaaat
301 actatttcaa ttgattaatg aagattcatt tgtaataaaa atattcacaa
351 atgcaaatga aagatgtgaa tcaaatcaat tccaagttga agaaacgatg
401 gaatattcat tgatcaaatt attcacttca tcataatctg atagatccct
451 tgaagaactg atcaatcaga cgagaataaa gatagagtcc tattctacat
501 gtcaatactg acaacaatga aatttatagt aagaggaaaa tccgtcgatt
551 taataaatcg tgagggttca agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
585 |
566 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.