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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AM266954.1 nt Pentas bussei chloroplast trnT-L-F ... 1739 bp Rhodopentas bussei QL-PLN-00-007 590 bp View
AM266955.1 nt Pentas caffensis chloroplast trnT-L... 1759 bp Pentas caffensis QL-PLN-00-007 590 bp View
AM266961.1 nt Pentas ionolaena chloroplast trnL-F... 995 bp Pentas ionolaena QL-PLN-00-007 590 bp View
AM266969.1 nt Pentas parvifolia chloroplast trnT-... 1707 bp Rhodopentas parvifolia QL-PLN-00-007 591 bp View
AM397157.1 nt Podophyllum peltatum tRNA-Leu gene ... 951 bp Podophyllum peltatum QL-PLN-00-007 540 bp View
AM404245.1 nt Zeugites pittieri plastid tRNA-Leu ... 1027 bp Zeugites pittieri QL-PLN-00-007 618 bp View
AM404247.1 nt Zeugites latifolia plastid tRNA-Leu... 1017 bp Zeugites latifolia QL-PLN-00-007 617 bp View
AM404249.1 nt Zeugites sagittatus plastid tRNA-Le... 1014 bp Zeugites sagittatus QL-PLN-00-007 617 bp View
AM404252.1 nt Pohlidium petiolatum plastid tRNA-L... 1026 bp Pohlidium petiolatum QL-PLN-00-007 617 bp View
AM404253.1 nt Calderonella sylvatica plastid tRNA... 1020 bp Zeugites sylvaticus QL-PLN-00-007 617 bp View
AM909706.1 nt Ornithogalum arabicum chloroplast t... 1002 bp Ornithogalum arabicum QL-PLN-00-007 598 bp View
AM909708.1 nt Ornithogalum arabicum chloroplast t... 1053 bp Ornithogalum arabicum QL-PLN-00-007 598 bp View
AP003280.2 nt Oryza sativa Japonica Group genomic... 147201 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AP014957.1 nt Oryza sativa Japonica Group DNA, ch... 43270923 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AP014960.1 nt Oryza sativa Japonica Group DNA, ch... 35502694 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AP014966.1 nt Oryza sativa Japonica Group DNA, ch... 23207287 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AP014966.1 nt Oryza sativa Japonica Group DNA, ch... 23207287 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AP014968.1 nt Oryza sativa Japonica Group DNA, ch... 27531856 bp Oryza sativa Japonica Group QL-PLN-00-007 614 bp View
AP017907.1 nt Tricyrtis macropoda chloroplast DNA... 153981 bp Tricyrtis macropoda QL-PLN-00-007 593 bp View
AP017909.1 nt Rumex nepalensis chloroplast DNA, n... 158777 bp Rumex nepalensis QL-PLN-00-007 596 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.