Match details
Record ID: |
AM404253.1 |
Database: |
nt |
Go to original record |
Description: |
Calderonella sylvatica plastid tRNA-Leu gene (partial), trnL-trnF intergenic spacer and tRNA-Phe gene (partial), specimen voucher J. D. Dwyer 9383A |
Taxon: |
Zeugites sylvaticus |
Original size: |
1020 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
618 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggcatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cctgttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aggtaattac gttgtgttgg gagtggaact ccctcgaaat
251 tagagaaaga agggctttat acatctaata cacacgtata gatactgaca
301 tagcaaacga ttaatcacgg aacccatatc ataatatagg ttctttattt
351 atttattttg tagaatgaaa ttaggaatga ttatgaaata gaaaattctg
401 cattttttta gaattattgt gaattcattc caatcgaata ttgagtaatc
451 aaatccttca attcattgtt ttcgagatct tttcaaaagt ggattaatca
501 gacgaggata aagagagagt cccattatac atgtcaatac tgacaacaat
551 gaaatttcta gtaaaaggaa aatccgtcga ctttctaagt cgtgagggtt
601 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.