European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH095698.1 nt Declieuxia juniperina voucher Ander... 1187 bp Declieuxia juniperina QL-PLN-00-007 580 bp View
MH115334.1 nt Aristida adscensionis tRNA-Leu (trn... 611 bp Aristida adscensionis QL-PLN-00-007 611 bp View
MH115343.1 nt Chorizanthe commissuralis tRNA-Leu ... 614 bp Chorizanthe commissuralis QL-PLN-00-007 614 bp View
MH115344.1 nt Chuquiraga atacamensis tRNA-Leu (tr... 525 bp Chuquiraga atacamensis QL-PLN-00-007 525 bp View
MH115350.1 nt Exodeconus integrifolius tRNA-Leu (... 571 bp Exodeconus integrifolius QL-PLN-00-007 571 bp View
MH115352.1 nt Fabiana denudata tRNA-Leu (trnL) ge... 571 bp Fabiana denudata QL-PLN-00-007 571 bp View
MH115354.1 nt Fagonia chilensis tRNA-Leu (trnL) g... 553 bp Fagonia chilensis QL-PLN-00-007 553 bp View
MH115357.1 nt Huidobria fruticosa tRNA-Leu (trnL)... 593 bp Huidobria fruticosa QL-PLN-00-007 593 bp View
MH115359.1 nt Junellia pappigera tRNA-Leu (trnL) ... 553 bp Junellia pappigera QL-PLN-00-007 553 bp View
MH115369.1 nt Nama dichotoma tRNA-Leu (trnL) gene... 557 bp Nama dichotoma QL-PLN-00-007 557 bp View
MH115370.1 nt Nassella nardoides tRNA-Leu (trnL) ... 598 bp Nassella nardoides QL-PLN-00-007 598 bp View
MH115375.1 nt Phacelia pinnatifida tRNA-Leu (trnL... 574 bp Phacelia pinnatifida QL-PLN-00-007 574 bp View
MH115386.1 nt Tiquilia atacamensis tRNA-Leu (trnL... 588 bp Tiquilia atacamensis QL-PLN-00-007 588 bp View
MH150979.1 nt Oryza sativa cultivar Bayar Putih t... 946 bp Oryza sativa QL-PLN-00-007 616 bp View
MH165324.1 nt Plantago ovata chloroplast, partial... 162116 bp Plantago ovata QL-PLN-00-007 583 bp View
MH177880.1 nt Lilium lancifolium plastid, complet... 152479 bp Lilium lancifolium QL-PLN-00-007 616 bp View
MH181163.1 nt Andropogon insolitus isolate TK437 ... 140278 bp Anatherum insolitum QL-PLN-00-007 525 bp View
MH181164.1 nt Hyparrhenia rudis isolate TK329 chl... 139322 bp Hyparrhenia rudis QL-PLN-00-007 530 bp View
MH181165.1 nt Andropogon gerardi isolate CAM807 c... 134222 bp Andropogon gerardi QL-PLN-00-007 525 bp View
MH181166.1 nt Elymandra androphila isolate TK592 ... 139731 bp Elymandra androphila QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.