Match details
Record ID: |
MH177880.1 |
Database: |
nt |
Go to original record |
Description: |
Lilium lancifolium plastid, complete genome. |
Taxon: |
Lilium lancifolium |
Original size: |
152479 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45083 |
45698 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttttaa tataaaacta caataaaaaa agataggtgc agagactcaa
201 tggaagttgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 attcttctat caaaattaca gagaggatgc ccgccctata tacgtatata
301 tacatactga ccatagtaaa cgattgatta atcgcggccc gaatccatta
351 taatatatat atatatatat atgaaaaatt taagagttat tgtaaatcta
401 ttccatattc caatcaaagt ttaaggaaga atcgaatatt cagtgatcaa
451 attattcatt ccagagtctg tatagatctt tttaaaaact gattattcgg
501 acgagaataa agagagagtc ccattctacg tgtcaatacc gacaacaatg
551 aaatttatag taaaaggaaa atccgtcgac tttataagtc gtgagggttc
601 aagtccctct atcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.