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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF926162.1 nt Ardisia solanacea voucher Wang20072... 893 bp Ardisia solanacea QL-PLN-00-007 572 bp View
MF926164.1 nt Ardisia tenera voucher Wang2007239 ... 892 bp Ardisia tenera QL-PLN-00-007 572 bp View
MF926165.1 nt Ardisia thyrsiflora voucher Gao et ... 901 bp Ardisia thyrsiflora QL-PLN-00-007 572 bp View
MF926167.1 nt Ardisia villosa voucher Wang2007160... 908 bp Ardisia villosa QL-PLN-00-007 582 bp View
MF926170.1 nt Ardisia crispa var. amplifolia vouc... 912 bp Ardisia crispa var. amplifolia QL-PLN-00-007 583 bp View
MF926173.1 nt Ardisia quinquegona var. salicifoli... 901 bp Ardisia quinquegona var. salicifolia QL-PLN-00-007 572 bp View
MF926174.1 nt Ardisia silvestris var. appressa vo... 901 bp Ardisia silvestris var. appressa QL-PLN-00-007 572 bp View
MF926176.1 nt Aegiceras corniculatum voucher Zhen... 888 bp Aegiceras corniculatum QL-PLN-00-007 567 bp View
MF926177.1 nt Embelia ribes subsp. pachyphylla vo... 911 bp Embelia ribes subsp. pachyphylla QL-PLN-00-007 586 bp View
MF926178.1 nt Maesa japonica voucher Wang2007196 ... 895 bp Maesa japonica QL-PLN-00-007 569 bp View
MF926179.1 nt Myrsine semiserrata voucher Wang200... 930 bp Myrsine semiserrata QL-PLN-00-007 589 bp View
MF926180.1 nt Myrsine seguinii voucher Wang200724... 903 bp Myrsine seguinii QL-PLN-00-007 575 bp View
MF967576.1 nt Glechoma longituba plastid, complet... 151768 bp Glechoma longituba QL-PLN-00-007 554 bp View
MF967577.1 nt Mentha canadensis plastid, complete... 152050 bp Mentha canadensis QL-PLN-00-007 572 bp View
MF967578.1 nt Ajuga decumbens plastid, complete g... 150377 bp Ajuga decumbens QL-PLN-00-007 557 bp View
MG052599.1 nt Stipa capillata voucher KRA S/4/3 p... 137835 bp Stipa capillata QL-PLN-00-007 598 bp View
MG052601.1 nt Stipa caucasica voucher KRA S/53/4 ... 137800 bp Stipa caucasica QL-PLN-00-007 598 bp View
MG052602.1 nt Stipa caucasica subsp. glareosa vou... 137602 bp Stipa caucasica subsp. glareosa QL-PLN-00-007 598 bp View
MG052611.1 nt Stipa pennata subsp. pennata vouche... 137818 bp Stipa pennata subsp. pennata QL-PLN-00-007 598 bp View
MG052612.1 nt Stipa richteriana subsp. richterian... 137831 bp Stipa richteriana subsp. richteriana QL-PLN-00-007 598 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.