Match details
Record ID: |
MG052599.1 |
Database: |
nt |
Go to original record |
Description: |
Stipa capillata voucher KRA S/4/3 plastid, complete genome. |
Taxon: |
Stipa capillata |
Original size: |
137835 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
888 |
1485 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagt ggttctcgaa
151 ctagaggata ggtgcagaga ctcaatggaa gctgttctaa cgaatcgagt
201 taattacgtt gtgttggtag tggaactcct tctaaattag agagagaggg
251 gctttataca tctaataaac acgtatagat actgacatag caaacgatta
301 atcacagaac ccatatcata attaggttct ttattctttt ttagaataaa
351 attaggaatg attatgaaat aaaaaattct gaattttttt cgaattattg
401 tgaattcatt ccaatcgaat attgagtaat caaatccttc aattcatagt
451 tttcgagatc ttttaaaaag tggattaatc ggacgaggac aaagagagag
501 tcccattcta catgtcaata ctggcaacaa tgaaatttct agtaaaagga
551 aaatccgtcg actttataag tcgtgagggt tcaagtccct ctatcccc
View other 13 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.