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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 598 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101   gggcaatcct gagccaaatc cgtgttttga gaaaacaagt ggttctcgaa
151   ctagaggata ggtgcagaga ctcaatggaa gctgttctaa cgaatcgagt
201   taattacgtt gtgttggtag tggaactcct tctaaattag agagagaggg
251   gctttataca tctaataaac acgtatagat actgacatag caaacgatta
301   atcacagaac ccatatcata attaggttct ttattctttt ttagaataaa
351   attaggaatg attatgaaat aaaaaattct gaattttttt cgaattattg
401   tgaattcatt ccaatcgaat attgagtaat caaatccttc aattcatagt
451   tttcgagatc ttttaaaaag tggattaatc ggacgaggac aaagagagag
501   tcccattcta catgtcaata ctggcaacaa tgaaatttct agtaaaagga
551   aaatccgtcg actttataag tcgtgagggt tcaagtccct ctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ145043.1 nt Stipa capillata isolate KRA0496240 ... 137823 bp Stipa capillata QL-PLN-00-007 598 bp View
MG052602.1 nt Stipa caucasica subsp. glareosa vou... 137602 bp Stipa caucasica subsp. glareosa QL-PLN-00-007 598 bp View
MG052611.1 nt Stipa pennata subsp. pennata vouche... 137818 bp Stipa pennata subsp. pennata QL-PLN-00-007 598 bp View
MG052612.1 nt Stipa richteriana subsp. richterian... 137831 bp Stipa richteriana subsp. richteriana QL-PLN-00-007 598 bp View
MG052613.1 nt Stipa tianschanica var. gobica vouc... 137847 bp Stipa tianschanica var. gobica QL-PLN-00-007 598 bp View
MH918071.1 nt Stipa lessingiana isolate 50 plasti... 137824 bp Stipa lessingiana QL-PLN-00-007 598 bp View
MH918074.1 nt Stipa richteriana isolate 13 plasti... 137824 bp Stipa richteriana QL-PLN-00-007 598 bp View
MH918076.1 nt Stipa richteriana isolate 22 plasti... 137828 bp Stipa richteriana QL-PLN-00-007 598 bp View
MH918077.1 nt Stipa richteriana isolate 43 plasti... 137824 bp Stipa richteriana QL-PLN-00-007 598 bp View
MZ146999.1 nt Stipa capillata voucher KRA0496240 ... 137823 bp Stipa capillata QL-PLN-00-007 598 bp View
MG052599.1 nt Stipa capillata voucher KRA S/4/3 p... 137835 bp Stipa capillata QL-PLN-00-007 598 bp View
MG052601.1 nt Stipa caucasica voucher KRA S/53/4 ... 137800 bp Stipa caucasica QL-PLN-00-007 598 bp View
MH918069.1 nt Stipa heptapotamica isolate 38 plas... 137829 bp Stipa heptapotamica QL-PLN-00-007 598 bp View
MH918072.1 nt Stipa lessingiana isolate 53 plasti... 137827 bp Stipa lessingiana QL-PLN-00-007 598 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.