Match details
Record ID: |
MF967576.1 |
Database: |
nt |
Go to original record |
Description: |
Glechoma longituba plastid, complete genome. |
Taxon: |
Glechoma longituba |
Original size: |
151768 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46641 |
47194 |
+ |
554 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacca aggttcaaaa
151 aacgaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgccggt agaggaacct ttccatggaa attttagaaa
251 ggatgaagga taaacgcatc tattgaatac tatatcaaac aaatgattaa
301 tgttggccct aatctgtttt tttaatatga aaatgaaaaa atagatgtga
351 atttttttca cgttgaagaa aaaatagaat attcatcaac tcattcactc
401 catagtccgg tagatctttt aaagaactga ttaatcggac gagaataaag
451 atagagtccc attctacatg tcaataccga caacaatgaa atttatagta
501 agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa gtccctctat
551 cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
554 |
535 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.