Match details
Record ID: |
MF926173.1 |
Database: |
nt |
Go to original record |
Description: |
Ardisia quinquegona var. salicifolia voucher Wang2007192 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Ardisia quinquegona var. salicifolia |
Original size: |
901 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
572 |
+ |
572 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tagtatggaa
51 cctactaagt gagaactttc aaattcagag aaaccctgga attaataaaa
101 atgggcaatc ctgagccaaa tcctcttttt cgaaaacaaa gattaaagga
151 aaataaaaaa gagggatagg tgcagagact caatggaagc tgttctaaca
201 aatggagttg atcgcgttgg tagaggaatc ttttcatcaa aacttcagaa
251 aggatgaaag ataaacgtat atacatatgc atatgtactg aaatcctata
301 tcaaaataaa atgcttattt tttctttcta tgaaaaatag aagaatcgtt
351 gcgaatcgat tccacattcc acattgaata aaaaatttca tattcattga
401 tcaaatcatt tactccatag tctaatagat cttgtgaata actgattaat
451 caggcaagaa taaagataga gtcccattct acatgtcaat atcgacaaca
501 ataatgaaat ttatagtacg aggaaaatcc gtcgacttta taaatcgtga
551 gggttcaagt ccctctatcc cc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
572 |
553 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.