Match details
Record ID: |
MF926174.1 |
Database: |
nt |
Go to original record |
Description: |
Ardisia silvestris var. appressa voucher Wang200770 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Ardisia silvestris var. appressa |
Original size: |
901 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
572 |
+ |
572 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tagtatggaa
51 cctactaagt gagaactttc aaattctaag aaaccctgga attaataaaa
101 atgggcaatc ctgagccaaa tcctcttttt cgaaaacaag gattaaagga
151 aaataaaaaa gagggatagg tgcagagact caatggaagc tgttctaaca
201 aatggagttg atcgcgtcgg tagaggaatc ttttcatcaa aacttcagaa
251 aggatgaaag ataaacgtat atacatatgc atatgtactg aaatcctata
301 tcaaaataaa atgcttattt tttctttcta tgaaaaatag aagaatcgtt
351 gcgaatcgat tccacattcc acattgaata aaagatttca tattcattga
401 tcaaatcatt tactccatag tctaatagac cttgtgaata actgattaat
451 caggcaagaa taaagataga gtcccattct acatgtcaat accgacaaca
501 ataatgaaat ttatagtacg gggaaaatcc gtcgacttta taaatcgtga
551 gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
572 |
553 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.