Match details
Record ID: |
MF926170.1 |
Database: |
nt |
Go to original record |
Description: |
Ardisia crispa var. amplifolia voucher Wang2007247 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Ardisia crispa var. amplifolia |
Original size: |
912 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
583 |
+ |
583 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tagtatggaa
51 cctactaagt gagaactttc aaattcagag aaaccctgga attaataaaa
101 atgggcaatc ctgagccaaa tcctcttttt cgaaaacaaa gattaaagga
151 aaataaaaaa gggggatagg tgcagagact caacggaagc tgttctaaca
201 aatggagttg atcgcgttgg tagaggaatc ttttcatcaa aacttcagaa
251 aggatgaaag ataaacgtat tataaacgta tatacatatg catatgtact
301 gaaatcctat atcaaaataa gatgcttatt ttttctttct atgaaaaata
351 gaagaatcgt tgcgaatcga ttccacattc cacattgaat aaaaaatttc
401 atattcattg atcaaatcat ttactccaca gtctaataga tcttgtgaat
451 aactgattaa tcaggcaaga ataaagatag agtcccattc tacatgtcaa
501 taccgacaac aataatgaaa tttatagtac gaggaaaatc cgtcgacttt
551 ataaatcgtg agggttcaag tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
583 |
564 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.