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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ620180.1 nt Vangueria infausta chloroplast trnT... 1726 bp Vangueria infausta QL-PLN-00-007 556 bp View
AJ620181.1 nt Vangueria parvifolia chloroplast tr... 1730 bp Vangueria parvifolia QL-PLN-00-007 556 bp View
AJ620182.1 nt Canthium stenosepalum chloroplast t... 1712 bp Canthium stenosepalum QL-PLN-00-007 552 bp View
AJ620183.1 nt Vangueriopsis cf. longiflora Luke 8... 1726 bp Vangueriopsis cf. longiflora Luke 8316 QL-PLN-00-007 552 bp View
AJ620184.1 nt Vangueria madagascariensis chloropl... 1730 bp Vangueria madagascariensis QL-PLN-00-007 556 bp View
AJ621107.1 nt Campylostachys cernua chloroplast t... 1644 bp Campylostachys cernua QL-PLN-00-007 567 bp View
AJ621108.1 nt Halleria elliptica chloroplast trnT... 1648 bp Halleria elliptica QL-PLN-00-007 565 bp View
AJ621109.1 nt Halleria lucida chloroplast trnT-tr... 1646 bp Halleria lucida QL-PLN-00-007 565 bp View
AJ621110.1 nt Halleria ovata chloroplast trnT-trn... 1630 bp Halleria ovata QL-PLN-00-007 565 bp View
AJ621111.1 nt Ixianthes retzioides chloroplast tr... 1253 bp Ixianthes retzioides QL-PLN-00-007 562 bp View
AJ621113.1 nt Kogelbergia verticillata chloroplas... 1662 bp Kogelbergia verticillata QL-PLN-00-007 567 bp View
AJ621114.1 nt Nuxia congesta chloroplast trnT-trn... 1689 bp Nuxia congesta QL-PLN-00-007 564 bp View
AJ621115.1 nt Nuxia congesta chloroplast trnT-trn... 1676 bp Nuxia congesta QL-PLN-00-007 563 bp View
AJ621116.1 nt Nuxia floribunda chloroplast trnT-t... 1625 bp Nuxia floribunda QL-PLN-00-007 565 bp View
AJ621117.1 nt Nuxia oppositifolia chloroplast trn... 1707 bp Nuxia oppositifolia QL-PLN-00-007 564 bp View
AJ621118.1 nt Nuxia oppositifolia chloroplast trn... 1478 bp Nuxia oppositifolia QL-PLN-00-007 563 bp View
AJ621119.1 nt Retzia capensis chloroplast trnT-tr... 1617 bp Retzia capensis QL-PLN-00-007 570 bp View
AJ621120.1 nt Stilbe ericoides chloroplast trnT-t... 1281 bp Stilbe ericoides QL-PLN-00-007 570 bp View
AJ621121.1 nt Stilbe rupestris chloroplast trnT-t... 1628 bp Stilbe rupestris QL-PLN-00-007 561 bp View
AJ621123.1 nt Lyperia antirrhinoides chloroplast ... 1703 bp Lyperia antirrhinoides QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.