Match details
Record ID: |
AJ621107.1 |
Database: |
nt |
Go to original record |
Description: |
Campylostachys cernua chloroplast trnT-trnL IGS (partial), tRNA-Leu gene and trnL-trnF IGS (partial) |
Taxon: |
Campylostachys cernua |
Original size: |
1644 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
678 |
1244 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattataaaa
101 atgggcaatc ctgagccaaa tcctgtttta tcaaaacaaa ggttcagaaa
151 acgaaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgttggt agaggaatct ttccatcgaa acttcagaaa
251 ggatgaagga taaacgtatt tattgaatac tatatcaaat cattaatgat
301 ggcccgaatc tgtatctgta tttttttata tgaaaaatgg aagaattggt
351 gtgaattgat attgattcca cattgaaaaa aaatcgaata ttcattcatc
401 aaatcattca ctccatagtc tgatagatct tttaaagaac tgattaatcg
451 gacgagaata aagatagagt cccattctac atgtcaatac cggcaacaat
501 gaaatttata gtaaaaggaa aatccgtcga ctttataaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.