Match details
Record ID: |
AJ621116.1 |
Database: |
nt |
Go to original record |
Description: |
Nuxia floribunda chloroplast trnT-trnL IGS (partial), tRNA-Leu gene and trnL-trnF IGS (partial) |
Taxon: |
Nuxia floribunda |
Original size: |
1625 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
677 |
1241 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgactgcgtt ggtagaggaa tctttccatc gaaacttcag
251 aaaggatgaa gaataaacgt atctattgaa tactatatca aatgattaat
301 gatggcccga atctgtatct ctattttttt atatgaaaaa tggaagaatt
351 ggtgtgaatt gattccacat tgaagaaaga atcgaatatt cattcatcaa
401 atcattcact ccatagtctg atagatcttt taaagaactg attaatcgga
451 cgagaataaa gatagagtcc cattctacat gtcaataccg gcaacaatga
501 aatttatagt aaaaggaaaa tccgtcgact ttataaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.