Match details
Record ID: |
AJ621119.1 |
Database: |
nt |
Go to original record |
Description: |
Retzia capensis chloroplast trnT-trnL IGS (partial), tRNA-Leu gene and trnL-trnF IGS (partial) |
Taxon: |
Retzia capensis |
Original size: |
1617 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
642 |
1211 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgactgcgtt ggtagaggaa tctttccatc gaaacttcag
251 aaaggatgaa ggataaacgt atttattgaa tactatatca aatcattaat
301 gatggcccga atctgtatct gtattttttt atatgaaaaa tggaagaatt
351 ggtgtgaatt gatattgatt ccacattgaa aaaaaatcga atattcattc
401 atcaaatcat tcactccata gtctgataga tcttttaaag aactgattaa
451 tcggacgaga ataaagatag agtcccattc tacatgtcaa taccggcaac
501 aatgaaattt atagtaaaag gaaaatccgt cgactttata aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.