Match details
Record ID: |
AJ621108.1 |
Database: |
nt |
Go to original record |
Description: |
Halleria elliptica chloroplast trnT-trnL IGS (partial), tRNA-Leu gene and trnL-trnF IGS (partial) |
Taxon: |
Halleria elliptica |
Original size: |
1648 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
680 |
1244 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctatttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaagggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgactgcgtt ggtagaggaa tctttccatc gaaacttcag
251 aaaggatgaa ggataaacgt atctattgaa tactatatca aatgattaat
301 gatggcccga atctgtatct gtattttttt atatgaaaaa tggaagaatt
351 ggtgtgaatt gattccacat tgaagaaaga atcgaatatt cattcatcaa
401 atcattcact ccatagtctg atagatcttt taaagaactg attaatcgga
451 cgagaataaa gatagagtcc cattctacat gtcaataccg gcaacaatga
501 aatttatagt aaaaggaaaa tccgtcgact ttataaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.