Match details
Record ID: |
AJ621111.1 |
Database: |
nt |
Go to original record |
Description: |
Ixianthes retzioides chloroplast trnT-trnL IGS (partial), tRNA-Leu gene and trnL-trnF IGS (partial) |
Taxon: |
Ixianthes retzioides |
Original size: |
1253 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
305 |
866 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgttggt agaggaatct ttccatcgaa acttccgaaa
251 ggatgaagga taaacgtatc tattgaatac tatatcaaat gattaatgat
301 ggcccgaatc tgtatctgta tttttttata tgaaaaatgg aagaattggt
351 gtgaattgat tccacattga agaaagaatc gaatattcat tcatcaaatc
401 attcactcca tagtctgata gatcttttaa agaactgatt aatcggacga
451 gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501 ttatagtaaa aggaaaatcc gtcgacttta taaatcgtga gggttcaagt
551 ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.