European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ680503.1 nt Wendlandia pingpienensis voucher XP... 1721 bp Wendlandia pingpienensis QL-PLN-00-007 565 bp View
KJ680504.1 nt Wendlandia scabra voucher XPW102 tR... 1747 bp Wendlandia scabra QL-PLN-00-007 565 bp View
KJ680505.1 nt Wendlandia speciosa voucher XPW134 ... 1768 bp Wendlandia speciosa QL-PLN-00-007 566 bp View
KJ680506.1 nt Wendlandia subalpina voucher XPW293... 1771 bp Wendlandia subalpina QL-PLN-00-007 567 bp View
KJ680507.1 nt Wendlandia tinctoria subsp. interme... 1759 bp Wendlandia tinctoria subsp. intermedia QL-PLN-00-007 566 bp View
KJ680508.1 nt Wendlandia tinctoria voucher XPW291... 1757 bp Wendlandia tinctoria QL-PLN-00-007 566 bp View
KJ680509.1 nt Wendlandia uvariifolia subsp. uvari... 1760 bp Wendlandia uvariifolia subsp. uvariifolia QL-PLN-00-007 566 bp View
KJ680512.1 nt Wendlandia uvariifolia subsp. chine... 1746 bp Wendlandia uvariifolia subsp. chinensis QL-PLN-00-007 566 bp View
KJ680513.1 nt Wendlandia sp. XPW101 tRNA-Thr (trn... 1747 bp Wendlandia sp. XPW101 QL-PLN-00-007 565 bp View
KJ681100.1 nt Poa langtangensis voucher R 88 tRNA... 1021 bp Poa langtangensis QL-PLN-00-007 611 bp View
KJ729765.1 nt Reaumuria alternifolia clone 1 tRNA... 1028 bp Reaumuria alternifolia QL-PLN-00-007 562 bp View
KJ729766.1 nt Reaumuria alternifolia clone 2 tRNA... 1029 bp Reaumuria alternifolia QL-PLN-00-007 562 bp View
KJ729768.1 nt Reaumuria alternifolia clone 4 tRNA... 1045 bp Reaumuria alternifolia QL-PLN-00-007 579 bp View
KJ729769.1 nt Reaumuria babataghi tRNA-Leu (trnL)... 1029 bp Reaumuria babataghi QL-PLN-00-007 574 bp View
KJ729770.1 nt Reaumuria badhysi clone 1 tRNA-Leu ... 1030 bp Reaumuria badhysi QL-PLN-00-007 579 bp View
KJ729771.1 nt Reaumuria botschantzevii clone 1 tR... 1035 bp Reaumuria botschantzevii QL-PLN-00-007 573 bp View
KJ729773.1 nt Reaumuria cistoides tRNA-Leu (trnL)... 1014 bp Reaumuria cistoides QL-PLN-00-007 562 bp View
KJ729774.1 nt Reaumuria fruticosa clone 1 tRNA-Le... 1034 bp Reaumuria fruticosa QL-PLN-00-007 582 bp View
KJ729775.1 nt Reaumuria fruticosa clone 2 tRNA-Le... 1034 bp Reaumuria fruticosa QL-PLN-00-007 582 bp View
KJ729776.1 nt Reaumuria hirtella clone 1 tRNA-Leu... 1046 bp Reaumuria hirtella QL-PLN-00-007 569 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.