Match details
Record ID: |
KJ729768.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria alternifolia clone 4 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria alternifolia |
Original size: |
1045 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
589 |
+ |
579 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag aaaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaacagt
151 aaaaaaaaat tattaaagtg agaagaaatg atggataggt gcagagactc
201 aacggaagct gttctaacaa atggagttga ctgcgttgtt ataagaattc
251 ttccatcaaa acttaaaaaa agatcaagac aaaccctata tttagaattt
301 atatttagat aaatacgtac tgaaatactc taaaaaagaa aaaaacgtct
351 taatgggcgg acaaaatatg tctttttata tgaaaaagtg gaagaatatt
401 catttataaa agtattcgct ccatggtccg atagatcttt tttttgacga
451 actgctcaat cggacgagaa tgaagataga gtcccattct acatgtcaat
501 actgacaaca atgaaattta tagtatgagg aaaatccgtc gactttagaa
551 atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.61e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
579 |
560 |
2.61e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.