Match details
Record ID: |
KJ680503.1 |
Database: |
nt |
Go to original record |
Description: |
Wendlandia pingpienensis voucher XPW104 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Wendlandia pingpienensis |
Original size: |
1721 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
790 |
1354 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccctttc cgaaaccaaa ggttcagaaa
151 gtgaaaaagg gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201 gagttggctg cattagtaga taaatctttc cgtctaaaat tccgaaaggt
251 aaagtgaagg ataaacgtat atatacgtat tgaatactat atcaaatgat
301 taatgacaac tcgactgaat ctgtattttt tatatcaaaa cggaagaatt
351 ggtgtgaata gattccacat tgaagaaaga atcgaatatt cattgatcaa
401 atgattcact ccatagtctg atagatcttt tcaagaattt attaatcaga
451 cgagaataaa gatagagtcc cgttctacat gtcaatgtcg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.