Match details
Record ID: |
KJ729775.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria fruticosa clone 2 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria fruticosa |
Original size: |
1034 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
592 |
+ |
582 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag agaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaaaagt
151 caaacaaatt cttaaagtga gaagaaataa tggataggtg cagagactca
201 acggaagctg ttctaacaaa tggagttgac tgtgttgtta taagaattct
251 tccatgaatt cttccatcaa aacttaaaaa aagatcaaga aaaaccctat
301 atttagataa atacgtactg aaatactcta aaaaagaaaa aaacgtctta
351 atgataatga cggccaaaat atgtcttttt tatatgaaaa atggaagaat
401 attcatttat caaagtattc gctccatggt ctgatagatc ttttttttga
451 cgaactgctc aatcggacga gaataaagat agagtcccat tctacatgtc
501 aatactgaca acaatgaaat ttatagtatg aggaaaatcc gtcgacttta
551 gaaatcgtga gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
582 |
563 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.