Match details
Record ID: |
KJ729765.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria alternifolia clone 1 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria alternifolia |
Original size: |
1028 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
572 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag aaaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaacagt
151 aaaaaaaatt attaaaatga gaagaaatga tggataggtg cagagactca
201 acggaagctg ttctaacaaa tggagttgac tgcgttgtta taagaattct
251 tccatcaaaa cttaaaaaaa gatcaagaca aaccctatat ttagataaat
301 acgtactgaa atactctaaa aaagaaaaaa acgtcttaat ggccaaaata
351 tgtcttttta tatgaaaaag tggaagaata ttcatttata aaagtattcg
401 ctccatggtc cgatagatct ttttttttga cgaactgctc aatcggacga
451 gaatgaagat agagtcccat tctacatgtc aatactgaca acaatgaaat
501 ttatagtatg aggaaaatcc gtcgacttta gaaatcgtga gggttcaagt
551 ccctctatcc cc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.