Match details
Record ID: |
KJ729769.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria babataghi tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria babataghi |
Original size: |
1029 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
584 |
+ |
574 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag aaaaaccctg
101 gaattaataa agatgggcaa tcgctgagcc aactcctgtt ttcaaaacag
151 taaaaaaaaa ttattaaagt gagaagaaat gatggatagg tgcagagact
201 caacggaagc tgttctaaca aatggagttg actgcgttgt tataagaatt
251 cttccatcaa aacttaaaaa aagatcaaga caaaccctat atttagaatt
301 taaataaata cgtactgaaa tactctaaaa aagaaaaaaa cgtcttattg
351 ggcggacaaa atatgtcttt ttatatgaaa aagtggaaga atattcattt
401 ataaaagtat tcgctccatg gtccgataga tctttttttt gacgaactgc
451 tcaatcggac gagaatgaag atagagtccc attctacatg tcaatactga
501 caacaatgaa atttatagta tgaggaaaat ccgtcgactt tagaaatcgt
551 gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
574 |
555 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.