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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF430790.1 nt Tachigali paniculata chloroplast tR... 1063 bp Tachigali paniculata QL-PLN-00-007 575 bp View
AF430791.1 nt Zuccagnia punctata chloroplast tRNA... 1060 bp Zuccagnia punctata QL-PLN-00-007 596 bp View
AF440738.1 nt Amorphophallus smithsonianus tRNA-L... 562 bp Amorphophallus smithsonianus QL-PLN-00-007 560 bp View
AF502031.1 nt Phyllostegia glabra tRNA-Leu (trnL)... 564 bp Phyllostegia glabra QL-PLN-00-007 563 bp View
AF502036.1 nt Sideritis gomeraea tRNA-Leu (trnL) ... 563 bp Sideritis gomeraea QL-PLN-00-007 562 bp View
AF502038.1 nt Sideritis macrostachys tRNA-Leu (tr... 563 bp Sideritis macrostachys QL-PLN-00-007 562 bp View
AF502039.1 nt Sideritis montana tRNA-Leu (trnL) g... 563 bp Sideritis montana QL-PLN-00-007 562 bp View
AF502066.1 nt Stenogyne purpurea tRNA-Leu (trnL) ... 564 bp Stenogyne purpurea QL-PLN-00-007 563 bp View
AF506837.1 nt Taxus canadensis chloroplast tRNA-L... 834 bp Taxus canadensis QL-PLN-00-007 522 bp View
AF506838.1 nt Taxus cuspidata chloroplast tRNA-Le... 821 bp Taxus cuspidata QL-PLN-00-007 522 bp View
AH003085.2 nt Nicotiana tabacum tRNA-Ser (Ser-tRN... 2100 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AH015556.2 nt Poa wolfii voucher Soreng 5800 US t... 1873 bp Poa wolfii QL-PLN-00-007 619 bp View
AH015557.3 nt Poa bulbosa voucher Catalan 13-2000... 1910 bp Poa bulbosa QL-PLN-00-007 563 bp View
AH015559.2 nt Poa bulbosa voucher Soreng 5958 US ... 1730 bp Poa bulbosa QL-PLN-00-007 611 bp View
AJ007724.1 nt Orobanche minor chloroplast trnL(UA... 986 bp Orobanche minor QL-PLN-00-007 541 bp View
AJ296491.1 nt Agathelpis angustifolia chloroplast... 1719 bp Agathelpis angustifolia QL-PLN-00-007 571 bp View
AJ296493.1 nt Selago sp. Bremer 3732 chloroplast ... 1753 bp Selago sp. Bremer 3732 QL-PLN-00-007 571 bp View
AJ296495.1 nt Pseudoselago ascendens chloroplast ... 1829 bp Pseudoselago ascendens QL-PLN-00-007 571 bp View
AJ296497.1 nt Glumicalyx flanaganii chloroplast t... 1771 bp Glumicalyx flanaganii QL-PLN-00-007 571 bp View
AJ296498.1 nt Pseudoselago subglabra chloroplast ... 1843 bp Pseudoselago subglabra QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.