Match details
| Record ID: |
AF430790.1 |
| Database: |
nt |
Go to original record |
| Description: |
Tachigali paniculata chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Tachigali paniculata |
| Original size: |
1063 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
575 |
+ |
575 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcgtttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatacg tatacgtact
301 gaaatactat ttcaatttca attgattaga ccagacagac cccaaatctc
351 tattttttaa tatttatatg acaaatgaaa ggtgtgaatc gaatattcat
401 tgatcaaatc attcactcca tcatagtctg atagatcttt tgaagaactg
451 attaatcgga cgagaataaa gatagagtcc cattctacat gtcaataccg
501 acaacaatga aatttatagt aagaggaaaa tccgtcgact ttagaaatcg
551 tgagggttca agtccctcta tcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
575 |
556 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
