Match details
Record ID: |
AF502038.1 |
Database: |
nt |
Go to original record |
Description: |
Sideritis macrostachys tRNA-Leu (trnL) gene, partial sequence; chloroplast gene for chloroplast product. |
Taxon: |
Sideritis macrostachys |
Original size: |
563 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
562 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaatga taattaaatt gagccttagt
51 atgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101 taatcaaaat gggcgatcct gatccaaatc ctgttttttc aaaacaaagg
151 ttcaaaaaac caaataaagg ataggtgcag agactcaacg gaagctgttc
201 taacaaatgg agttgactgc gttggtagag gaatcctttc taggaaactt
251 cagaaaagat gaaggataaa cgtatctatc gaatactata tcaaatgatt
301 aatgatggcc cgaatccgta tttttgaata tgaaaaatag aagaattggt
351 gtgaattgat tctatattga agaaaaaatc gaatattcat tcatcaaacc
401 attcactcca tagtccgata gatcttttaa agacctgatt aatcggacga
451 gaataaagat agagtcccat tctacatgtc aatactggca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551 ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.