Match details
Record ID: |
AH015557.3 |
Database: |
nt |
Go to original record |
Description: |
Poa bulbosa voucher Catalan 13-2000 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Poa bulbosa |
Original size: |
1910 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
929 |
1491 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tcctttaata
251 aacacgtatc gatacttaca tagcaaacga ttaatcacag aacccatatt
301 ataatattgg ttctttattc ttttttagaa tgaaataaaa aattcagaat
351 ttttttcgaa ttattgtgaa tccattccaa tcgaatattt agtaatcaaa
401 tccttcaatt caaagttttg aggtctttaa aaaagtggat taatcggacg
451 aggacaaaga gagagtccca ttctacatgt caatactgac aacaatgaaa
501 tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg agggttcaag
551 tccctctatc ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.