Match details
Record ID: |
AF502066.1 |
Database: |
nt |
Go to original record |
Description: |
Stenogyne purpurea tRNA-Leu (trnL) gene, partial sequence; chloroplast gene for chloroplast product. |
Taxon: |
Stenogyne purpurea |
Original size: |
564 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
563 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaatta taattaaatt gagccttagt
51 gtgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101 taatcaaaat gggcgatcct gatccaaatc ctgttttttc aaaacaatgg
151 ttcaaaaaac caaataaagg ataggtgcag agactcaacg gaagctattc
201 taacaaatgg agttgactgc gttggtagag gaatcctttc tacggaaact
251 tcagaaagga tgaaggataa acgtatctat cgaatactat atcaaatgat
301 taatgatggt ccgaatccgt atttttgaat atgaaaaata gaagaattgg
351 tgtgaattga ttctatattg aagaaaaaat cgaatattca ttcatcaaat
401 cattcactcc atagtccgat agatctttta aagacctgat taatcggacg
451 agaataaaga tagagtccca ttctacatgt caataccggc aacaatgaaa
501 tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
551 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.