European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR346920.1 nt Luffa aegyptiaca chromosome 1, comp... 380879 bp Luffa aegyptiaca QL-PLN-00-007 593 bp View
OR353656.1 nt Sorghum bicolor subsp. drummondii c... 140754 bp Sorghum bicolor subsp. drummondii QL-PLN-00-007 523 bp View
OR415857.1 nt Berberis amurensis isolate Ber_50_M... 166699 bp Berberis amurensis QL-PLN-00-007 562 bp View
OR415858.1 nt Berberis amurensis isolate Ber_69_M... 166601 bp Berberis amurensis QL-PLN-00-007 562 bp View
OR415861.1 nt Berberis amurensis isolate Ber_156_... 166708 bp Berberis amurensis QL-PLN-00-007 562 bp View
OR415862.1 nt Berberis amurensis isolate Ber_225_... 166652 bp Berberis amurensis QL-PLN-00-007 562 bp View
OR438637.1 nt Lilium leichtlinii var. maximowiczi... 152625 bp Lilium leichtlinii var. maximowiczii QL-PLN-00-007 608 bp View
OR459824.1 nt Coffea arabica cultivar Caturra Chi... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OR471583.1 nt Bistorta sinomontana chloroplast, c... 159795 bp Bistorta sinomontana QL-PLN-00-007 603 bp View
OR475243.1 nt Hoya lockii chloroplast, complete g... 177063 bp Hoya lockii QL-PLN-00-007 555 bp View
OR475244.1 nt Hoya verticillata chloroplast, comp... 176429 bp Hoya verticillata QL-PLN-00-007 550 bp View
OR478166.1 nt Ocimum basilicum var. purpurascens ... 152407 bp Ocimum basilicum var. purpurascens QL-PLN-00-007 549 bp View
OR521089.1 nt Meconopsis pinnatifolia chloroplast... 153557 bp Meconopsis pinnatifolia QL-PLN-00-007 591 bp View
OR521090.1 nt Meconopsis paniculata chloroplast, ... 152887 bp Meconopsis paniculata QL-PLN-00-007 599 bp View
OR526424.1 nt Tricyrtis xianjuensis chloroplast, ... 155748 bp Tricyrtis xianjuensis QL-PLN-00-007 604 bp View
OR567247.1 nt Herpetospermum pedunculosum chlorop... 156455 bp Herpetospermum pedunculosum QL-PLN-00-007 611 bp View
OR567249.1 nt Thymus quinquecostatus chloroplast,... 151855 bp Thymus quinquecostatus QL-PLN-00-007 544 bp View
OR567250.1 nt Perilla frutescens chloroplast, com... 152593 bp Perilla frutescens QL-PLN-00-007 566 bp View
OR570614.1 nt Persicaria hydropiper isolate Bch_1... 159843 bp Persicaria hydropiper QL-PLN-00-007 593 bp View
OR570615.1 nt Persicaria hydropiper isolate Sj_1 ... 159819 bp Persicaria hydropiper QL-PLN-00-007 593 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.