Match details
Record ID: |
OR570614.1 |
Database: |
nt |
Go to original record |
Description: |
Persicaria hydropiper isolate Bch_1 chloroplast, complete genome. |
Taxon: |
Persicaria hydropiper |
Original size: |
159843 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47900 |
48492 |
+ |
593 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gtttgagcct tagtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaaaaaa
101 atgggcaatc ctgagccaac tcctgctttc aaaaaggaaa gaaaaagggg
151 ataggtgcag agactcaatg gaagatgttc taacaaatgg aattgactgt
201 cttgcgttgt aatatgttat aagaattctt cgatctaaac gccaaaaagg
251 atgaagaaga aacctgcata ggtacttaaa tagaaagact atactatgat
301 ataataaaaa atacaaaaat attgatgacg aaccgaaatt atcttttatg
351 aatatgaaaa aaatggaaga atttttttga atcgattcta agttgaagaa
401 agaatcgaat attcgtttat taaattaaag catttactcc acagtttggt
451 atatcttttg aagaaccgat ccatcggatg agaatgaaga tagagtccca
501 ttctacgtgt caatcccgac aacaatgaaa tttatagtaa gaggaaaatc
551 cgtcgacttt ataaatcgtg agggttcaag tccctctatc ccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
593 |
574 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.