Match details
Record ID: |
OR521090.1 |
Database: |
nt |
Go to original record |
Description: |
Meconopsis paniculata chloroplast, complete genome. |
Taxon: |
Meconopsis paniculata |
Original size: |
152887 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46427 |
47025 |
+ |
599 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttcag aaaacaaatt aagggatttc
151 tgaaagcgag aataaaaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaatgaat ggagttgact gcgttggtag aggaatcctt ctattaaatt
251 ttatttaaac tccataaaga atgagggatg aacctatata cgatacgtac
301 gtatacgtac tgaaatatca aagattctat taatgccgcc ctaaatatat
351 tttttttaca taaaaaaaag gaataatttt tgtgaatcta ttccaagttg
401 aaggaagaat cgaaaattca gtgatcaaac cattcactcc atagtctgat
451 agatcttttg acgaactgat taatcggacg agaataaaga tagagtcccg
501 ttctacatgt caatatcaat accgacaaca atgaaattta tagtaagagg
551 aaaatccgtc gactttataa atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.70e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
599 |
580 |
2.70e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.