European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW148814.1 nt Catalpa bungei voucher ENC850152 ch... 158143 bp Catalpa bungei QL-PLN-00-007 563 bp View
MW148815.1 nt Catalpa bungei voucher K136 chlorop... 158140 bp Catalpa bungei QL-PLN-00-007 563 bp View
MW148816.1 nt Catalpa bungei voucher K139 chlorop... 158142 bp Catalpa bungei QL-PLN-00-007 563 bp View
MW149076.1 nt Callicarpa longifolia var. floccosa... 154285 bp Callicarpa longifolia var. floccosa QL-PLN-00-007 562 bp View
MW160432.1 nt Gardenia jasminoides chloroplast, c... 155247 bp Gardenia jasminoides QL-PLN-00-007 550 bp View
MW160466.1 nt Melampyrum roseum chloroplast, comp... 143580 bp Melampyrum roseum QL-PLN-00-007 549 bp View
MW167297.1 nt Bougainvillea spectabilis chloropla... 154520 bp Bougainvillea spectabilis QL-PLN-00-007 615 bp View
MW181770.1 nt Clerodendrum japonicum chloroplast,... 152217 bp Clerodendrum japonicum QL-PLN-00-007 559 bp View
MW186709.1 nt Orinus intermedius chloroplast, com... 134283 bp Orinus intermedius QL-PLN-00-007 613 bp View
MW186792.1 nt Chimonobambusa hejiangensis chlorop... 138911 bp Chimonobambusa hejiangensis QL-PLN-00-007 614 bp View
MW201575.1 nt Paralamium griffithii chloroplast, ... 152664 bp Paralamium griffithii QL-PLN-00-007 563 bp View
MW233592.1 nt Meconopsis punicea chloroplast, com... 153261 bp Meconopsis punicea QL-PLN-00-007 600 bp View
MW238407.1 nt Mazus sp. JY-2020 chloroplast, comp... 152388 bp Mazus sp. JY-2020 QL-PLN-00-007 567 bp View
MW238408.1 nt Mazus pumilus chloroplast, complete... 152855 bp Mazus pumilus QL-PLN-00-007 566 bp View
MW242810.1 nt Coronanthera pulchra chloroplast, p... 152734 bp Coronanthera pulchra QL-PLN-00-007 561 bp View
MW242811.1 nt Rhabdothamnus solandri chloroplast,... 152636 bp Rhabdothamnus solandri QL-PLN-00-007 561 bp View
MW245830.1 nt Primulina tenuituba chloroplast, co... 153236 bp Primulina tenuituba QL-PLN-00-007 552 bp View
MW246161.1 nt Chonemorpha megacalyx chloroplast, ... 153862 bp Chonemorpha megacalyx QL-PLN-00-007 560 bp View
MW246825.1 nt Anisodus tanguticus chloroplast, co... 152714 bp Anisodus tanguticus QL-PLN-00-007 599 bp View
MW252167.1 nt Callicarpa formosana chloroplast, c... 154251 bp Callicarpa formosana QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.