Match details
Record ID: |
MW242810.1 |
Database: |
nt |
Go to original record |
Description: |
Coronanthera pulchra chloroplast, partial genome. |
Taxon: |
Coronanthera pulchra |
Original size: |
152734 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47454 |
48014 |
+ |
561 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaatcaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 agcgaaaaag gggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgac tgcgttggta gaggaatctt tccatcgaaa cttcagaaag
251 gatgaaggat aaacgtatct attgaatact atagaaaatg attaataacg
301 gcccgaatct gtatctgtat ttttgtatat gaaaaatgga agaattggtg
351 tgaattgatt ccacattgaa gaaagaatcg aatattcatg aatcaaataa
401 tgaactccat agtccgatag atcttttaaa gaacttatta atcggacgag
451 aataaagata gagtcccgtt ctacatgtca ataccggcaa caatgaaaca
501 actagtaaga ggaaaatccg tcgactttca aaatcgtgag ggttcaagtc
551 cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
561 |
542 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.