European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN810999.1 nt Fritillaria crassicaulis chloroplas... 151860 bp Fritillaria crassicaulis QL-PLN-00-007 607 bp View
MN811000.1 nt Fritillaria crassicaulis chloroplas... 151860 bp Fritillaria crassicaulis QL-PLN-00-007 607 bp View
MN811001.1 nt Fritillaria hupehensis chloroplast,... 152189 bp Fritillaria hupehensis QL-PLN-00-007 607 bp View
MN811002.1 nt Fritillaria hupehensis chloroplast,... 152189 bp Fritillaria hupehensis QL-PLN-00-007 607 bp View
MN811003.1 nt Fritillaria hupehensis chloroplast,... 152189 bp Fritillaria hupehensis QL-PLN-00-007 607 bp View
MN814851.1 nt Ajuga campylantha chloroplast, comp... 150478 bp Ajuga campylantha QL-PLN-00-007 556 bp View
MN814852.1 nt Ajuga campylanthoides chloroplast, ... 150500 bp Ajuga campylanthoides QL-PLN-00-007 547 bp View
MN814853.1 nt Ajuga ciliata chloroplast, complete... 150494 bp Ajuga ciliata QL-PLN-00-007 557 bp View
MN814854.1 nt Ajuga decumbens chloroplast, comple... 150325 bp Ajuga decumbens QL-PLN-00-007 555 bp View
MN814855.1 nt Ajuga forrestii chloroplast, comple... 150342 bp Ajuga forrestii QL-PLN-00-007 555 bp View
MN814856.1 nt Ajuga lupulina chloroplast, complet... 150534 bp Ajuga lupulina QL-PLN-00-007 555 bp View
MN814857.1 nt Ajuga nipponensis chloroplast, comp... 150459 bp Ajuga nipponensis QL-PLN-00-007 555 bp View
MN814858.1 nt Amethystea caerulea chloroplast, co... 151890 bp Amethystea caerulea QL-PLN-00-007 559 bp View
MN814859.1 nt Caryopteris mongholica chloroplast,... 151635 bp Caryopteris mongholica QL-PLN-00-007 561 bp View
MN814860.1 nt Caryopteris trichosphaera chloropla... 151380 bp Caryopteris trichosphaera QL-PLN-00-007 556 bp View
MN814861.1 nt Clerodendrum mandarinorum chloropla... 151288 bp Clerodendrum mandarinorum QL-PLN-00-007 556 bp View
MN814862.1 nt Clerodendrum yunnanense chloroplast... 151691 bp Clerodendrum yunnanense QL-PLN-00-007 545 bp View
MN814863.1 nt Colquhounia coccinea chloroplast, c... 151979 bp Colquhounia coccinea QL-PLN-00-007 563 bp View
MN814865.1 nt Phlomis alpina chloroplast, complet... 151844 bp Phlomis alpina QL-PLN-00-007 562 bp View
MN814866.1 nt Pseudocaryopteris paniculata chloro... 151953 bp Pseudocaryopteris paniculata QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.