Match details
Record ID: |
MN814866.1 |
Database: |
nt |
Go to original record |
Description: |
Pseudocaryopteris paniculata chloroplast, complete genome. |
Taxon: |
Pseudocaryopteris paniculata |
Original size: |
151953 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
116065 |
116631 |
- |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctgctaag tgataacttt caaattcaga gaaaccccgg aactaatcaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaccaa aggttcaaaa
151 aacgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201 acaaatggag ttgactgcgc tggtagagga atctttccat gtaaacttca
251 gaaaggatga aggataaatg gatctattga atactatatc gaatgattaa
301 tgatagcccg aatctgtatt ttttaatatg aaaaatggaa gaattggtag
351 gaattgattc cacattgaag aaaaaatcga atattcattc atcaaatcat
401 tcactccata gtccatagtc cgatcgttct tttcaagaac ggattaatcg
451 gacgagaata aagatagagt ccccttctac atgtcaatac cggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.