Match details
Record ID: |
MN814861.1 |
Database: |
nt |
Go to original record |
Description: |
Clerodendrum mandarinorum chloroplast, complete genome. |
Taxon: |
Clerodendrum mandarinorum |
Original size: |
151288 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
115932 |
116487 |
- |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttgctaag tgatgacttt caaattcaga gaaaccccgg aactaataaa
101 aatgggcaat cctgagccaa atcccgtttt ctcaaaacaa agttttaaaa
151 aacgaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgctggt agaggaattt ttccatggaa acttcagaaa
251 ggatgaagga taaatggatc tattgaatac tatatcgaat gattaatgat
301 ggcccgaatc tgtatttttt aatatgaaaa atggaagaat tggtgtgaat
351 tgattccaca ttgaagaaaa aatcgaatat taattcatca aatcattcac
401 tccacagtcc gatagatctt ttcaagatct gattaatcgg acgagaataa
451 agatagagtc ccgttctaca tgtcaatacc ggcaacaatg aaatttatag
501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551 atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.