Match details
Record ID: |
MN814863.1 |
Database: |
nt |
Go to original record |
Description: |
Colquhounia coccinea chloroplast, complete genome. |
Taxon: |
Colquhounia coccinea |
Original size: |
151979 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
116313 |
116875 |
- |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaattc taattaaatt gagccttggt
51 gtgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101 taataaaaat gggcgatcct gatccaaatc ctgttttctc aaaacaaagg
151 ttcaaaaaac gaaataaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgc gttggtagag gaatcctttc tacggaaact
251 tcataaagga tgaaggataa acgtatctat cgaatactat atcaaatgat
301 taatgatggc ccgaatctgt attttttaat atgaaaaata gaaaaatggg
351 tgtcaattga ttctacattg aagaaaaaat cgaatattca ttcatcaaat
401 cattcactcc atagtccgat agatctttta aagaactgat taatcggacg
451 agaataaaga tagagtccca ttctacatgt caatactggc aacaatgaaa
501 tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
551 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.