Match details
Record ID: |
MN814865.1 |
Database: |
nt |
Go to original record |
Description: |
Phlomis alpina chloroplast, complete genome. |
Taxon: |
Phlomis alpina |
Original size: |
151844 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
116243 |
116804 |
- |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaatta taattaaatt gagccttagt
51 gtgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101 taataaaaat gggcgatcct gatccaaatc ctgttttttc aaaacaaagg
151 ttcaaaaaac gaactaaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgc gttggtagag gaatcctttc tacggaaact
251 tcagaaagga tgaaggataa acgtatctat cgaatactat atcaaatgat
301 taatgatggc ccgaatccgt atttttaata tgaaaaatag aagaattggt
351 gtgaattgat tctatattga agaaaaaatc gaatattcat tcatcaaatc
401 attcactcca tagtccgata gatcttttaa agaactgatt aatcggacga
451 gaataaagat agagtcccat tctacatgtc aatactggca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551 ccctctatcc cc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.