Match details
Record ID: |
MN811000.1 |
Database: |
nt |
Go to original record |
Description: |
Fritillaria crassicaulis chloroplast, complete genome. |
Taxon: |
Fritillaria crassicaulis |
Original size: |
151860 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
44632 |
45238 |
+ |
607 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc ttgattttga gaaaaagggt ttaatttata
151 gtttttataa tataaaacga caataaaaaa agataggtgc agagactcaa
201 tggaagctgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 atccttctat caaaatgacg gagaggatgc ccgccctata tacgtatata
301 tacatactga catagtaaac gattgattaa tcgcggcctg aatccattat
351 aatatatata tatgaaaaat ttaagagtta ttgtaaatct attccatatt
401 ccaatcaaag tttaaggaag aatcgaatat tcagtgatca aattattcat
451 tccagagtct gtatagatct ttttaaaaac tgattattcg gacgagaata
501 aagagagagt cccattctac gtgtcaatac cgacaacaat gaaatttata
551 gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt caagtccctc
601 tatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
607 |
588 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.