Match details
Record ID: |
MN814853.1 |
Database: |
nt |
Go to original record |
Description: |
Ajuga ciliata chloroplast, complete genome. |
Taxon: |
Ajuga ciliata |
Original size: |
150494 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
115603 |
116159 |
- |
557 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctgctaag tgatataact ttcaaattca gagaaaccca ggaactaata
101 aaaatgggca atcctgagcc aaatcctgtt ttctcaaaac aaaggttcaa
151 aaaacgaaaa aagggatagg tgcagagact caatggaagc tgttctaaca
201 aatggagttc actgcgctgg tagaggaatc tttccatgga aacttcagaa
251 aggatgaagg ataaatggat ctattgaata ctatatcgaa tgattcacga
301 tggcccgaat ctgtattttt taatatgaaa aatggaagaa ttggtgtgaa
351 ttgattccac attgaagaaa aaatcgaata ttcattcatc aaatcattca
401 ctccatagtc cgatagatct tttcaagaac tgattaatcg gacgagaata
451 aagatagagt cccgttctac atgtcaatac cggcaacaat gaaatttata
501 gtaataggaa aatccgtcga ctttaaaaat cgtgagggtt caagtccctc
551 tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
557 |
538 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.